Low FODMAP High Fiber Egg Muffins: IBS-Friendly High-Protein High-Fiber Breakfast

These Low FODMAP High Fiber Egg Muffins are a delicious solution if you’ve been searching for easy low FODMAP breakfast ideas, healthy egg muffins, IBS-friendly breakfast meal prep, or a simple but filling high protein breakfast that’s high in fiber.

Made with eggs, colorful vegetables, beans, and a cheesy topping, they’re both satisfying and practical for anyone who wants a nourishing breakfast without a lot of morning effort.

They’re easy to make ahead, simple to portion, and perfect for busy weekdays when you need something quick, wholesome, and ready to grab.

Whether you want a reliable meal prep breakfast, a healthy snack, or an easy low FODMAP breakfast recipe to keep on repeat, these egg muffins are a smart and flavorful option to save for later.

High Fiber Egg Muffin Recipe

Low FODMAP High Fiber Egg Muffins – At a Glance

  • Ready in: about 40–45 minutes total
  • Skill level: beginner-friendly
  • Serves: makes 12 egg muffins
  • Method: baked in a muffin pan
  • Low FODMAP serving size: about 4 muffins (one-third of the recipe yield)
  • Great for: breakfast meal prep, grab-and-go mornings, high-protein snacks, or an easy IBS-friendly breakfast

Equipment

  • Measuring spoons
  • Scale
  • 12-muffin pan, medium size

Ingredients

  • 10 eggs
  • 1 tsp salt or spices with salt
  • 1 tsp dry basil
  • non-stick oil spray
  • 1 cup (120 g) cheese to put on top – 10g per muffin
  • Stuffing:
    • 200 g tomatoes (1 big tomato)
    • 140 g broccoli (heads)
    • 1/4 cup (45 g) Chickpeas, canned, drained, rinsed
    • 1/4 cup (45 g) black beans, canned, drained, rinsed

Instructions

  1. Preheat oven to 375F.
  2. Rinse outer shell of eggs, crack into a large bowl and whisk.
  3. Chop the broccoli and tomatoes and mix into the whisked eggs.
  4. Rinse and drain the beans and add to the egg mixture
  5. Add salt and dry basil and whisk.
  6. Grate cheese and set aside.
  7. Spray muffin pans with non-stick spray.
  8. Using a spoon, evenly distribute the mixture into the muffin tray.
  9. Sprinkle muffins with cheese.
  10. Place tray in the oven and cook for 30-35 minutes.
  11. Broil for 2-3 min.
  12. Remove the muffin pan from the oven and let it cool about 5 minutes before removing muffins from the pan.

Low FODMAP Serving Size

This recipe contains several high FODMAP ingredients such as tomatoes, broccoli, and pulses.

But no worries!

I designed the recipe so that one-third of the recipe yield contains low FODMAP portions of these ingredients.

Final Words

These Low FODMAP Rainbow Egg Muffins are not only visually stunning but also a practical solution for anyone managing IBS or following a low FODMAP diet.

With balanced portions of high and low FODMAP ingredients, they provide a satisfying, gut-friendly meal.

Give them a try and elevate your mornings with this easy, wholesome recipe that’s perfect for busy lifestyles. Enjoy!

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